PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G086800.1
Common NameB456_001G086800, LOC105789115
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 295aa    MW: 32474.1 Da    PI: 6.5177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G086800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.65.9e-10208251755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ ++RR+ri +++  L+el+P+       K++ +++LekA+ Y+k Lq
  Gorai.001G086800.1 208 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 251
                         5679*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-14199260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-12202258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-11203255No hitNo description
SMARTSM003539.9E-12207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7209251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MALAKDPICS LQTSSFNNGN FDEGGDDHLK KLGGGVNNFQ MTSSSSCYSP GSVDSDSFVF  60
RPPHEEVHSL INFKGSSMYD NFIHQYHHGT NYGSLLSFEQ NEKAPQSGTY LKRASQKDNY  120
SMWDPRLVED FSCFETASNF SSKENNGDWL YSESAMDADS IPELRSPGVA GVKRLNTGDS  180
TQALKKQCSN EAKKAKSKSG PSKDPQSIAA KNRRERISER LKILQELVPN GSKVDLVTML  240
EKAISYVKFL QLQVKVLATD EFWPVQGGKA PDISQVREAI DAILSSSQKD MNSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471808.10.0PREDICTED: putative transcription factor bHLH086
SwissprotQ9FJ007e-69BH086_ARATH; Putative transcription factor bHLH086
TrEMBLA0A0D2LWJ70.0A0A0D2LWJ7_G
STRINGPOPTR_0004s08770.15e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42602854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-67RHD SIX-LIKE 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]